Source code for covalent._workflow.depsbash

# Copyright 2021 Agnostiq Inc.
# This file is part of Covalent.
# Licensed under the GNU Affero General Public License 3.0 (the "License").
# A copy of the License may be obtained with this software package or at
# Use of this file is prohibited except in compliance with the License. Any
# modifications or derivative works of this file must retain this copyright
# notice, and modified files must contain a notice indicating that they have
# been altered from the originals.
# Covalent is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
# FITNESS FOR A PARTICULAR PURPOSE. See the License for more details.
# Relief from the License may be granted by purchasing a commercial license.

import subprocess
from copy import deepcopy
from typing import List, Union

from .deps import Deps
from .transport import TransportableObject

def apply_bash_commands(commands):
    for cmd in commands:
        proc =
            cmd, stdin=subprocess.DEVNULL, shell=True, capture_output=True, check=True, text=True

class DepsBash(Deps):
    """Shell commands to run before an electron

    Deps class to encapsulate Bash dependencies for an electron.

    The specified commands will be executed as subprocesses in the
    same environment as the electron.

        commands: A list of bash commands to execute before the electron runs.


    def __init__(self, commands: Union[List, str] = []):
        if isinstance(commands, str):
            self.commands = [commands]
            self.commands = commands

        super().__init__(apply_fn=apply_bash_commands, apply_args=[self.commands])

[docs] def to_dict(self) -> dict: """Return a JSON-serializable dictionary representation of self""" attributes = self.__dict__.copy() for k, v in attributes.items(): if isinstance(v, TransportableObject): attributes[k] = v.to_dict() return {"type": "DepsBash", "short_name": self.short_name(), "attributes": attributes}
[docs] def from_dict(self, object_dict) -> "DepsBash": """Rehydrate a dictionary representation Args: object_dict: a dictionary representation returned by `to_dict` Returns: self Instance attributes will be overwritten. """ if not object_dict: return self attributes = deepcopy(object_dict)["attributes"] for k, v in attributes.items(): if isinstance(v, dict) and v.get("type", None) == "TransportableObject": attributes[k] = TransportableObject.from_dict(v) self.__dict__ = attributes return self